Basic Information
VIS ID
TVIS10001375
Fusion event
HBV-LOC105371589 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
21398570/21495243 (Hg38)
End
21398570/21495243 (Hg38)
Location type
Intronic
Target gene
LOC105371589
Nearest miRNA
hsa-mir-1180/Upstream/2150669; hsa-mir-10226/Downstream/5798667;
Nearest TSS
ENST00000595228/Upstream/35028; ENST00000584594/Downstream/24271;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/30963, chr17-CpG: 81/Downstream/16158
Nearby gene
KCNJ12(-75391) ; LINC02693(+33001) ;
Upstream sequence
ATCCACAGGAGAGACAGGGATCAGTTGACCTTAGGGTGTGTCTGGTGTCAACTCTAATTGGACCAGTAAGGGAACAGAAGCCTTGAGAAAGTACCACAAC
Downstream sequence
AGTCTGAAAGTACTCAGACAGCCAGTGTCTGTGACCATGCTGCCATTCAGATTTCTGCCACTTGTTTTCCAGGCTGCAGATTCTTCAACACACGAAACCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate