Basic Information
VIS ID
TVIS10001377
Fusion event
HBV-chr7 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
48071495/48031898 (Hg38)
End
48071495/48031898 (Hg38)
Location type
Promoter
Target gene
C7orf57 ; SUN3
Nearest miRNA
hsa-mir-1183/Upstream/3150098; hsa-mir-10399/Downstream/8923887;
Nearest TSS
ENST00000635602/Upstream/2779; ENST00000461741/Downstream/3613;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/52106, chr7-CpG: 104/Downstream/3343
Upstream sequence
ttctgggaacagcactagggagcaggcacagcacatgatcactgtcatgggtggaggcagctgcaatagcacttccggtttccagggtagcaatagcagt
Downstream sequence
gaaagagaatggaatattattcagccataaaaagtaggaaattgtgtcatttgtgtccacatgaatgagcctggagaacattatgctaagtgaaataaac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate