Basic Information
VIS ID
TVIS10001396
Fusion event
HBV-LINC02107 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
38085097/38084995 (Hg38)
End
38085097/38084995 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
LINC02107
Nearest miRNA
hsa-mir-10397/Upstream/1937007; hsa-mir-103a-1/Downstream/472507;
Nearest TSS
ENST00000502646/Upstream/59298; ENST00000508853/Downstream/63485;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/244371, chr5-CpG: 104/Downstream/172787
Nearby gene
GDNF-AS1(-209197) ; EGFLAM(+173414) ;
Upstream sequence
ctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaa
Downstream sequence
TCACAGAAATACCAGTGTCCCTAATATTTCAATGGCTGTTAGAGATTCTCTACACCCAGATTTAGCTAGAGAAGTTCTAAGAATTCTGCTAATTGGATCC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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