VISDB Viral Integration Site DataBase

VIS ID

TVIS10001400

Fusion event

HBV-SLCO3A1 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr15

Cytoband

q26.1

Reference genome

Start

End

92436735/91893505 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-218-1-3p ; hsa-let-7e-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-3150b-3p ; hsa-mir-4689 ; hsa-mir-4784 ; hsa-mir-6838-5p ; hsa-mir-6858-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-330-3p ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-374b-3p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-3974 ; hsa-mir-370-5p ; hsa-mir-874-5p ; hsa-mir-4635 ; hsa-mir-149-5p ; hsa-mir-4264 ; hsa-mir-1224-3p ; hsa-mir-622 ; hsa-mir-4650-5p ; hsa-mir-1972 ; hsa-mir-6765-3p ; hsa-mir-210-3p ; hsa-mir-147b ; hsa-mir-933 ; hsa-mir-3907 ; hsa-mir-1470 ; hsa-mir-6887-3p ; hsa-mir-4756-3p ; hsa-mir-3919 ; hsa-mir-4433b-3p ; hsa-mir-6856-5p ; hsa-mir-6758-5p

Nearest miRNA

hsa-mir-10393/Upstream/1886664; hsa-mir-1302-10/Downstream/1010894;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/39053, chr15-CpG: 50/Downstream/22531

Upstream sequence

ccaagatcaaagtactggctgatctggtatctggtaagggcctgctttctggttgatagatggcaccttctcattgtgtcctcaccaggccaaagggtgt

Downstream sequence

ggcaactctttggggcctctgttataagggcactaatcccattcatgagggcctcaccctcatgacttaatcacctcccaaaggcttcacctcctaatac