Basic Information
VIS ID
TVIS10001428
Fusion event
HBV-chr6 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q13
Reference genome
GRCh37/hg19
Start
72553397/71843694 (Hg38)
End
72553397/71843694 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA6D
Nearest miRNA
hsa-mir-10398/Upstream/440073; hsa-mir-10524/Downstream/1123993;
Nearest TSS
ENST00000381078/Upstream/392860; ENST00000370419/Downstream/43009;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/254869, chr6-CpG: 64/Downstream/42639
Nearby gene
LINC00472(-422949) ; RIMS1(+43009) ;
Upstream sequence
CCACCACTCTTGTGACCGACATGTCAGGGTGCTGCTCTCTGGCTTCCCTGATCGCCTGAGCCAGTGCCTGCCAGGGTCAGGACAGAGAACGGCTGTGAGC
Downstream sequence
taattttagatatttattctattctaatatatgtgttggatgctataaatttccctctaagcactgctttcactgcaacccacacattttgataagtttg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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