Basic Information
VIS ID
TVIS10001437
Fusion event
HBV-chr13 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
38061154/37487017 (Hg38)
End
38061154/37487017 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/13324513; hsa-mir-1267/Downstream/2177017;
Nearest TSS
ENST00000623511/Upstream/2248; ENST00000612438/Downstream/47923;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/427188, chr13-CpG: 45/Downstream/382528
Nearby gene
CSNK1A1L(-381353) ; LINC00547(+47923) ;
Upstream sequence
gaggcaatgttccattatttcatcATTTAAATTTATTTGGGTTTTTGGGAATGTATGAGTGAGTTTACACCCACTTTCATTtcatttccgaatttgaaga
Downstream sequence
ttgagctttacaaagaggtagtgacttacctcaactcacacaatgaacttccccaaagaggtgtggttggaattagagcTTGTTCTACCCACGCCAGTGT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate