Basic Information
VIS ID
TVIS10001462
Fusion event
HBV-LOC112267863 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
124162764/124292868 (Hg38)
End
124162764/124292868 (Hg38)
Location type
Intronic
Target gene
LOC112267863
Nearest miRNA
hsa-let-7a-2/Upstream/911356; hsa-mir-3167/Downstream/2695590;
Nearest TSS
ENST00000527297/Upstream/28041; ENST00000642111/Downstream/17969;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/551031, chr11-CpG: 44/Downstream/329900
Nearby gene
OR8G5(-27001) ; OR8D1(+16972) ;
Upstream sequence
gagtgggtcagaggtgagattgtttttctgccacatagaaggccagagctggttggagttgggtgttttctttcccccaggtcatttaggcgctgataaa
Downstream sequence
actccagcaggttaggtgctgatttaatagtttctcctgaggtcagactaagaaaaacataattcttcagaatgctttaaagtggttccttttccactcc
Target sequence
GTTGCAAGAGAAAGTCTTGTCATTACAAAACATCAAGACTTTAAGGAAAGAAAATCAATCTCTAGGTGTGCtttttttttttttcctttcttttcttgtcttAAGGAATGAGGTATCCATAGCTTGCCTGAGGATAATCCTTCACCTGTGTTTGAGATTCACAacctgctatctcaggggttttattctaacagtttcaactaacagccaaataccaatcattgccaaacctacatctctagctctgaatttttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate