Basic Information
VIS ID
TVIS10001463
Fusion event
HBV-LOC105378027 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
141060242/140739105 (Hg38)
End
141060242/140739105 (Hg38)
Location type
Intronic
Target gene
LOC105378027
Nearest miRNA
hsa-mir-10398/Upstream/55222; hsa-mir-1202/Downstream/10363570;
Nearest TSS
ENST00000381078/Upstream/652423; ENST00000565399/Downstream/113819;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1363664, chr6-CpG: 46/Downstream/1349231
Nearby gene
MIR4465(-55222) ; NMBR(+1336503) ;
Upstream sequence
tgtaatcccagcactttgggaggccaaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaa
Downstream sequence
cattggtctatgtgcctacttttatatcagtaccatgctgttttggtgattatactgttacagtataacttgaattcaagtaatgtgatgcacccagatt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate