VISDB Viral Integration Site DataBase

VIS ID

TVIS10001464

Fusion event

HBV-CHD9 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr16

Cytoband

q12.2

Reference genome

Start

End

53216803/53182891 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-210-3p ; hsa-mir-155-5p ; hsa-mir-7-5p ; hsa-mir-26b-5p ; hsa-let-7e-5p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-22-3p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-376a-5p ; hsa-mir-181d-5p ; hsa-mir-376a-2-5p ; hsa-mir-944 ; hsa-mir-664a-3p ; hsa-mir-2052 ; hsa-mir-1193 ; hsa-mir-4262 ; hsa-mir-3607-3p ; hsa-mir-3668 ; hsa-mir-3686 ; hsa-mir-3935 ; hsa-mir-4663 ; hsa-mir-4682 ; hsa-mir-8077 ; hsa-mir-433-3p ; hsa-mir-7154-5p ; hsa-mir-34b-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6794-3p ; hsa-mir-627-3p ; hsa-mir-4639-3p ; hsa-mir-342-3p ; hsa-mir-548c-3p ; hsa-mir-3163 ; hsa-mir-628-5p ; hsa-mir-7641 ; hsa-mir-3171 ; hsa-mir-139-5p

Nearest miRNA

hsa-mir-1225/Upstream/2440514; hsa-mir-11401/Downstream/3062629;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/50965, chr16-CpG: 37/Downstream/190524

Upstream sequence

ATACATATTCTTAATTCTTTTAAGAAAGGAATGAATGTTTTAGAGACTTACTTTTCATTGAAATTATTTTGTGGAATTTGAAATCCCCAATAAGATCAAG

Downstream sequence

TGTTTTAAGTTTATATCATATATGTATGAATGTGTGAATATACGAATGCATATGAATATATGTGAGACTATATATTAGCTAACTTTTTGTTTTAGGTTGC