PXDNL _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001485
Fusion event
HBV-PXDNL integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
52714185/51801625 (Hg38)
End
52714185/51801625 (Hg38)
Location type
Intronic
Target gene
PXDNL
Nearest miRNA
hsa-mir-124-1/Upstream/8905350; hsa-mir-10400/Downstream/9913163;
Nearest TSS
ENST00000518652/Upstream/392204; ENST00000521612/Downstream/7820;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/391964, chr8-CpG: 108/Downstream/96985
Upstream sequence
tgtacagctaccatcttcaacactgctggttatcataccagggcaaaagACAGTTCTGGAGTGACACACATCATTTTGCACTTAACTCACTGGCCAGAGC
Downstream sequence
atagaaaggacctatgttgaaatattgggggctggttcccGATAAAGAACAGTGTGCACAAAGCCCATTTGGGTTCCTGCCTCTCTAGACTTTCTGCTGC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate