Basic Information
VIS ID
TVIS10001501
Fusion event
HBV-LOC107986606 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
54536306/54671508 (Hg38)
End
54536306/54671508 (Hg38)
Location type
Intronic
Target gene
LOC107986606
Nearest miRNA
hsa-mir-10398/Upstream/1394437; hsa-mir-10524/Downstream/2718624;
Nearest TSS
ENST00000381078/Upstream/301537; ENST00000306858/Downstream/169347;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/875334, chr6-CpG: 74/Downstream/174847
Nearby gene
TINAG(-281356) ; FAM83B(+175263) ;
Upstream sequence
caggttcatgcaattcttctgcctcagcctcccgaatacgtgggattacaggcgcctgccaccatgcctggctaatttttttgcagttttagtagagatg
Downstream sequence
TTCTAATTAGGACTAGAAAGGACTTggccaggtgtggtggcccatacctataattccagcactttgggaggccgaggtgagtagatcacttgaggccagg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate