FGGY _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001502
Fusion event
HBV-FGGY integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p32.1
Reference genome
GRCh37/hg19
Start
59828049/59362377 (Hg38)
End
59828049/59362377 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
FGGY
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-12136/Upstream/4136654; hsa-mir-101-1/Downstream/370850;
Nearest TSS
ENST00000473358/Upstream/52290; ENST00000475949/Downstream/30831;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/65255, chr1-CpG: 90/Downstream/452038
Upstream sequence
tctgtcctttctcttcCCTCTGTGTCAGAAATGTATACAGGAACACATCCTCCTGCCTCCTATTTCTTCTCTCCTCTGGGCTTCCCACTAGGTTATTGCT
Downstream sequence
GTCCTAACATTCCTAAAACTGTGTTCACAAAACACTCTCCACACAAGGACTGATGGTGGCTCCCATTCTTTTCTGACTCAAGTATCTAATACAAGTCCAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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