GGT1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001510
Fusion event
HBV-GGT1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr22
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
25000901/24604934 (Hg38)
End
25000901/24604934 (Hg38)
Location type
Intronic
Target gene
GGT1
Nearest miRNA
hsa-mir-1286/Upstream/1718555; hsa-let-7a-3/Downstream/850712;
Nearest TSS
ENST00000624155/Upstream/1699; ENST00000432867/Downstream/2687;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/11622, chr22-CpG: 28/Downstream/54201
Upstream sequence
CTCCTGTCTCCCCTCTCTGGAATCCTCAGCTGCTGCCAGGCTTCAGCTGTGCCCCATTGAAGGCAGCTCTGTCTCCCTACTTTCCCCAGCCCAGGGTTTT
Downstream sequence
CCTTTTGGGGTCAGCTGCAGGGATCTGGGCCATCCTTTGCCCACTCAGACTTTCTTTCTGCCCACCTGCTGCTGTGAATCCTGTATGTCatatatatata
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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