C16orf82 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001514
Fusion event
HBV-C16orf82 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
27071445/27060124 (Hg38)
End
27071445/27060124 (Hg38)
Location type
Promoter
Fragile sites / regions
FRA16E
Target gene
C16orf82
Nearest miRNA
hsa-mir-1225/Upstream/1034814; hsa-mir-11401/Downstream/1330858;
Nearest TSS
ENST00000527434/Upstream/338250; ENST00000505035/Downstream/6583;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1366814, chr16-CpG: 34/Downstream/49566
Upstream sequence
CTTTTAAAGCAGAAGGTTCCATTAGGGTCGGGCAGCACCCTGCAGGCCCGCTTCGGGGCAGGCCCTGTCTTGGGTGCGTCCCGttggtgctcagagcatc
Downstream sequence
cccttgcagagtgacattatcacgatcattcctccatttccaaggaggaatagctatggttcagagaggttaagtggatcacgcaatgtcacctcggtgg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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