Basic Information
VIS ID
TVIS10001516
Fusion event
HBV-chr22 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
35501134/35105141 (Hg38)
End
35501134/35105141 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1286/Upstream/1668472; hsa-let-7a-3/Downstream/230499;
Nearest TSS
ENST00000624155/Upstream/39005; ENST00000610215/Downstream/17520;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/1182492, chr22-CpG: 76/Downstream/152227
Nearby gene
ISX(-17754) ; HMGXB4(+152311) ;
Upstream sequence
ttctgcatttctatcgttttatcctttcaatcgtttatataagtggaatcatgcagtttgtaacctttagtgattagctttgtttactcagcataactct
Downstream sequence
cctgagatccattcaagttgcttcgtgtgccaatggtccgttgctttttaccaccgagcactatgccatggcgtggatgcaccacacagtctgtttgatc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate