Basic Information
VIS ID
TVIS10001552
Fusion event
HBV-LOC107986848 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
129165573/129525732 (Hg38)
End
129165573/129525732 (Hg38)
Location type
Intronic
Target gene
LOC107986848
Nearest miRNA
hsa-mir-10525/Upstream/1317789; hsa-mir-10399/Downstream/244651;
Nearest TSS
ENST00000635602/Upstream/22940; ENST00000477428/Downstream/85898;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/22535, chr7-CpG: 104/Downstream/85664
Nearby gene
SMKR1(-12800) ; NRF1(+85982) ;
Upstream sequence
tcactgcaagctccacctcccatgttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgccagccaccacgccaggctaattttt
Downstream sequence
TCCCTGTGGCCCCCCTACCTCGGCTGTGCTCTGTACCTCTTCCCCCAACCCTTCACTGGCCTGTGCAGATGGGACCAGGGTGGGATCATGGGCTATACAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate