Basic Information
VIS ID
TVIS10001553
Fusion event
HBV-NBPF25P integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
149035435/143540773 (Hg38)
End
149035435/143540773 (Hg38)
Location type
ncRNA_intronic
Fragile sites / regions
FRA1F
Target gene
NBPF25P
Nearest miRNA
hsa-mir-101-1/Upstream/26446045; hsa-mir-1182/Downstream/2309814;
Nearest TSS
ENST00000473358/Upstream/40261; ENST00000443018/Downstream/195293;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/41865, chr1-CpG: 76/Downstream/102115
Upstream sequence
ggattccactctattccattcgatgatcattccattcgagtccattcaatgattccattccagtccatttgatgattccatttgattccattcgatgatg
Downstream sequence
attccatttcattccattcaatgattccattcgattccattcgatgattccatatgagtcctttcgattattccagtcgagtccattcgatgatcccatt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate