DIS3L2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001560
Fusion event
HBV-DIS3L2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
233197922/232333212 (Hg38)
End
233197922/232333212 (Hg38)
Location type
Intronic
Target gene
DIS3L2
miRNAs that regulate target gene
hsa-let-7a-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-10b/Upstream/160465; hsa-mir-149/Downstream/217262;
Nearest TSS
ENST00000437798/Upstream/4704; ENST00000417808/Downstream/731;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/371086, chr2-CpG: 174/Downstream/17758
Upstream sequence
tgtcctcctcgaccaccaccacctcctccttccaccacctcctccttctcctcctccgctgtcgcctcctcctcctcctcctcctcctcctcctcctcct
Downstream sequence
cctcctccgctgtcgcctcctcctcctcctcctcctcctcctccgctgtcgcctcctcctcctcctctgcctccacctctgccatcgccacctcctcctc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate