VISDB Viral Integration Site DataBase

VIS ID

TVIS10001563

Fusion event

HBV-LYN integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr8

Cytoband

q12.1

Reference genome

Start

End

56922889/56010330 (Hg38)

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-222-3p ; hsa-mir-32-3p ; hsa-mir-4731-3p ; hsa-mir-4801 ; hsa-mir-548c-3p ; hsa-mir-205-5p ; hsa-mir-6513-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-4278 ; hsa-mir-625-5p ; hsa-mir-3148 ; hsa-mir-4668-5p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-4330 ; hsa-mir-10b-3p ; hsa-mir-6732-5p ; hsa-mir-6805-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-628-5p ; hsa-mir-466 ; hsa-mir-221-3p ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-122-5p ; hsa-mir-1304-3p ; hsa-mir-143-5p ; hsa-mir-3135b ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-4639-3p ; hsa-mir-504-3p ; hsa-mir-564 ; hsa-mir-5693 ; hsa-mir-5698 ; hsa-mir-6499-3p ; hsa-mir-6794-3p ; hsa-mir-891a-3p

Nearest miRNA

hsa-mir-124-1/Upstream/13114055; hsa-mir-10400/Downstream/5704458;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/129564, chr8-CpG: 69/Downstream/63667

Upstream sequence

aaaaggtggtagtaaatgaggtcagataaacagtaagagacaagggatttttaggtcatctagaatttagattttttcctgagagggcagaggagccacg

Downstream sequence

CAGCAGCTGGTAATCTTGCTCTGCTTGACAACATCTGAGTGCAGCCGTTTGAGAAGAAAACATCTATTCTCTCCAAAAATGCACCCAACTAGCTCTATGT