Basic Information
VIS ID
TVIS10001565
Fusion event
HBV-LOC105378054 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
150591703/150270567 (Hg38)
End
150591703/150270567 (Hg38)
Location type
Intronic
Target gene
LOC105378054
Nearest miRNA
hsa-mir-10398/Upstream/9586684; hsa-mir-1202/Downstream/832108;
Nearest TSS
ENST00000381078/Upstream/127491; ENST00000546121/Downstream/98325;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/126701, chr6-CpG: 124/Downstream/329343
Nearby gene
PPP1R14C(-20175) ; IYD(+98325) ;
Upstream sequence
AAGGTCACACCGCTGtctgtctctctctttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctGCCTTC
Downstream sequence
agcactgaatgagaataggttcagagaggctctggcccagccacatggtcaaagaagatttatgaatagagaaagaaaagtgacaaacaaaacggaagtg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate