MRPL1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001596
Fusion event
HBV-MRPL1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
78808871/77887717 (Hg38)
End
78808871/77887717 (Hg38)
Location type
Intronic
Target gene
MRPL1
miRNAs that regulate target gene
hsa-mir-16-5p
Nearest miRNA
hsa-mir-12113/Upstream/1312091; hsa-mir-1243/Downstream/4865620;
Nearest TSS
ENST00000502981/Upstream/4468; ENST00000504901/Downstream/20608;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/24856, chr4-CpG: 75/Downstream/169494
Upstream sequence
TTATAAAAATTAGGACCTAAATCTATAATATAAACTTCTTGGATGCCAGTCTTACTCATAGCTGACACATTTTAGATCCTACTGGAAAACTAAGAAATGC
Downstream sequence
tttgttgcccaggctggtcttgaactcttggcatcaagcaatcctcctgccttggcctcccaaagtactggggttacaggtgtgagccaccacacccaac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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