Basic Information
VIS ID
TVIS10001597
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
104774588/105438887 (Hg38)
End
104774588/105438887 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/4622322; hsa-mir-103a-1/Downstream/5074942;
Nearest TSS
ENST00000502646/Upstream/45917; ENST00000513676/Downstream/1541982;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/2179038, chr5-CpG: 253/Downstream/2230542
Nearby gene
RAB9BP1(-338789) ; LINC01950(+1376310) ;
Upstream sequence
CCCAGCCAAAAGTTTTTTtatatatttatatatatatgtatatacgtatatacatttatatatatacgtatatacgtatatacatttatatatatacgta
Downstream sequence
gggattaataaccagaatatataaggagctcaaacaactctataggaaatgatctaataacccaattagtgaataggcaaaatattttaaaagacatttc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate