IGSF11 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001604
Fusion event
HBV-IGSF11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
118716678/118997831 (Hg38)
End
118716678/118997831 (Hg38)
Location type
Intronic
Target gene
IGSF11
miRNAs that regulate target gene
hsa-mir-4668-5p ; hsa-mir-3613-3p ; hsa-mir-340-5p ; hsa-mir-3163
Nearest miRNA
hsa-let-7g/Upstream/2147464; hsa-mir-12124/Downstream/1086733;
Nearest TSS
ENST00000440867/Upstream/54758; ENST00000492792/Downstream/15406;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1000114, chr3-CpG: 98/Downstream/36414
Upstream sequence
gtaatcccagcactttgggaggccaaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaat
Downstream sequence
GATTTCCTACAGTACTACACAAAAATATTTAATATAATGTACTGTTCATGGCAAATGCTAAGAACTTCCAGGTTTCTAATAAGTAACCATTACTTTTCCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate