Basic Information
VIS ID
TVIS10001606
Fusion event
HBV-chr11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
p14.3
Reference genome
End
24329290/24307744 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/888554; hsa-let-7a-2/Downstream/3207226;
Nearby gene
MIR8054(-888554) ; LUZP2(+189226) ;
Upstream sequence
ATATTGCTGGTACACAGAAAGAAACTGTGAGCCTCTCTAAGCAGCATGCTCCCCCTTTTGTTACCTCTTGAAGTGCCTCCAATTCATCATGTATATTCTG
Downstream sequence
GGCCAAGTCTGTGTATTAAAAaaaaaagataggaggtggtaccaggaagaacaaatcacagtctgtaatttattggttgtgtgacattaaatatgtccct
Target sequence
CTGAAGAAAATTGAAATACCACAAATGTTAATAAATAGATGAAACCCCTGGGGGATCCAGAGAAAAAATCTTTGTATTGCCAAAATAACCCTGAGGGTAGAATTCTTCAAATGCTTTTTGTAAGGAAATATATAATGTAATACAATTAAAAATGAAAGGCATAAAGGGTTTACTATTAGTATAACACACGACTAATGTGTAAAGTTATTTATCTGAAGAAAAGACAGCTAAGTATCCTAAACTTGGTAGTTACTC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate