Basic Information
VIS ID
TVIS10001624
Fusion event
HBV-chr16 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
34252390/35018019 (Hg38)
End
34252390/35018019 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/854346; hsa-mir-11401/Downstream/15274597;
Nearest TSS
ENST00000527434/Upstream/38175; ENST00000319817/Downstream/3730;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/43142, chr16-CpG: 93/Downstream/4358
Nearby gene
LINC00273(-289887) ; UBE2MP1(+151412) ;
Upstream sequence
ACAATTGTGGCCTGAACTCATCAGGTTCTTGGACTTATTTGTTTACAACAACCCACCCCATATTTTATTTTTCTTAGGTAGTCTTTCTCTCCAAATTCCA
Downstream sequence
AAGGCCTTGGCAGTATTGTTTTTTGAACTGATGTGTGAAATGCACTTACACCTCAGATGGGTTTCTTCTTGGTTAGCAACTAATGCATTTTTTATAAAGC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate