CAP2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001637
Fusion event
HBV-CAP2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
17548589/17548358 (Hg38)
End
17548589/17548358 (Hg38)
Location type
Intronic
Target gene
CAP2
miRNAs that regulate target gene
hsa-mir-605-5p
Nearest miRNA
hsa-mir-3691/Upstream/1406734; hsa-mir-10398/Downstream/1023426;
Nearest TSS
ENST00000381078/Upstream/154626; ENST00000259963/Downstream/51997;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/266255, chr6-CpG: 101/Downstream/51793
Upstream sequence
tttgcccaagcttacatcaaacacttagaaaactttagcaaaaattaaccacaaagcaggcaagtcagcaatttcccttttttttttttttttttttttt
Downstream sequence
ctgtctcaaaaaaaaaaagaaagaaagaaagaaaagaaaagaaaatgcaatagaaaataaggttgaaacagctattttgttgctaggtgcaacaaaactg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate