SLC25A21 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001643
Fusion event
HBV-SLC25A21 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr14
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
37603853/37134648 (Hg38)
End
37603853/37134648 (Hg38)
Location type
Intronic
Target gene
SLC25A21
miRNAs that regulate target gene
hsa-mir-625-5p ; hsa-mir-4668-5p ; hsa-mir-3148 ; hsa-mir-335-3p ; hsa-mir-3611 ; hsa-mir-4289 ; hsa-mir-4666a-3p
Nearest miRNA
hsa-mir-208a/Upstream/182257; hsa-mir-1185-1/Downstream/10626347;
Nearest TSS
ENST00000550708/Upstream/325777; ENST00000556667/Downstream/37240;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/467505, chr14-CpG: 61/Downstream/37379
Upstream sequence
gtgggagaacagcttgagcccaggaggtcaaggctgcagtgagccatgctcactccactgcactctagccgcctgggtcacagagtgagactccatctct
Downstream sequence
aaaaaaaaaaaaaaagaaaGAAAGaaagaaaagaaaagaaaagaaaacaaaCAGCAACAACAAAAACCTGACTATTCCAGAAAAAATGTTGAAATATAGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate