Basic Information
VIS ID
TVIS10001647
Fusion event
HBV-LINC01562 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p32.3
Reference genome
GRCh37/hg19
Start
51673378/51207706 (Hg38)
End
51673378/51207706 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
LINC01562
Nearest miRNA
hsa-mir-12136/Upstream/147603; hsa-mir-101-1/Downstream/628638;
Nearest TSS
ENST00000473358/Upstream/95246; ENST00000486691/Downstream/27390;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/229342, chr1-CpG: 87/Downstream/28389
Nearby gene
C1orf185(-59624) ; RNF11(+28567) ;
Upstream sequence
ggaggctgaggcaggagaatggcttgaacccgggaggtggaggttgtagtgagttaagatggcaccactgcactccagcctgggcaacagagcaagatcc
Downstream sequence
tgtctcaaaaaaaaaaaaaagaaagaaagaaagaaaAGAAAAGAAAAGAAAAAagaacactaggagataaagaaagtatgctccagctttaggggaaaaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate