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VISDB
Viral Integration Site DataBase
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TVIS10001653
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001653
Fusion event
HBV-P4HB integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
79817302/81859426 (Hg38)
End
79817302/81859426 (Hg38)
Location type
Intronic
Target gene
P4HB
miRNAs that regulate target gene
hsa-mir-210-3p
;
hsa-mir-615-3p
;
hsa-mir-18a-3p
;
hsa-mir-484
;
hsa-mir-183-5p
;
hsa-mir-92a-3p
;
hsa-mir-188-5p
;
hsa-mir-3672
;
hsa-mir-4520-3p
;
hsa-mir-6516-3p
;
hsa-mir-422a
;
hsa-mir-378i
;
hsa-mir-378h
;
hsa-mir-378f
;
hsa-mir-378e
;
hsa-mir-378d
;
hsa-mir-378c
;
hsa-mir-378b
;
hsa-mir-378a-3p
;
hsa-mir-4638-3p
;
hsa-mir-518c-5p
;
hsa-mir-451b
;
hsa-mir-514a-5p
;
hsa-mir-548n
;
hsa-mir-1252-5p
;
hsa-mir-1294
;
hsa-mir-135b-3p
;
hsa-mir-298
;
hsa-mir-3650
;
hsa-mir-3919
;
hsa-mir-4292
;
hsa-mir-4308
;
hsa-mir-4710
;
hsa-mir-4756-3p
;
hsa-mir-4787-5p
;
hsa-mir-483-5p
;
hsa-mir-548e-5p
;
hsa-mir-597-5p
;
hsa-mir-6077
;
hsa-mir-6134
;
hsa-mir-642b-5p
;
hsa-mir-668-3p
;
hsa-mir-670-5p
;
hsa-mir-6752-5p
;
hsa-mir-6758-5p
;
hsa-mir-6782-5p
;
hsa-mir-6791-5p
;
hsa-mir-6842-5p
;
hsa-mir-6856-5p
;
hsa-mir-7110-5p
;
hsa-mir-7854-3p
;
hsa-mir-887-3p
Nearest miRNA
hsa-mir-10226/Upstream/165557; hsa-mir-4525/Downstream/377242;
Nearest TSS
ENST00000595228/Upstream/211;
ENST00000576021/Downstream/304;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/12814
,
chr17-CpG: 147/Downstream/567
Upstream sequence
TTCCCAGCGGCTTTGGCATACTCAGGGGCCAGAGCCTTGCAGTGGCCACACCAAGGGGCATCTGGAAGCGGAAATGAGATGCTAGAAAGCAGCCTTGATC
Downstream sequence
CCTAAAGCAGCCTTGATCCCTCAGCAGTGCTTCCCTTTTTCCTCTGGCATTTCCCTTCATAAAAACCTTATCTACTCACCAAGATAACCCCTCCTAACGC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Sample Information
×
Sample name
078165T
Sample type
Tumor
Gender
Female
CpG Island Information
×
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