VISDB Viral Integration Site DataBase

VIS ID

TVIS10001654

Fusion event

HBV-chr17 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr17

Cytoband

q25.3

Reference genome

Start

End

79821060/81863184 (Hg38)

Location type

Promoter;downstream

Target gene

ARHGDIA ; P4HB

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-210-3p ; hsa-mir-151a-5p ; hsa-mir-877-3p ; hsa-mir-744-5p ; hsa-mir-423-5p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-484 ; hsa-mir-484 ; hsa-mir-183-5p ; hsa-mir-183-5p ; hsa-mir-92a-3p ; hsa-mir-92a-3p ; hsa-mir-188-5p ; hsa-mir-4745-3p ; hsa-mir-1538 ; hsa-mir-6894-5p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-766-5p ; hsa-mir-891a-5p ; hsa-mir-4524a-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-361-3p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-4768-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4524b-3p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-151b ; hsa-mir-330-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4695-5p ; hsa-mir-6801-5p ; hsa-mir-298 ; hsa-mir-4783-3p ; hsa-mir-4729 ; hsa-mir-6510-5p ; hsa-mir-1273h-3p ; hsa-mir-6866-5p ; hsa-mir-877-5p ; hsa-mir-4653-3p ; hsa-mir-6847-3p ; hsa-mir-4771 ; hsa-mir-3166 ; hsa-mir-3975 ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-6768-5p ; hsa-mir-6743-5p ; hsa-mir-4688 ; hsa-mir-3672 ; hsa-mir-4520-3p ; hsa-mir-6516-3p ; hsa-mir-422a ; hsa-mir-378i ; hsa-mir-378h ; hsa-mir-378f ; hsa-mir-378e ; hsa-mir-378d ; hsa-mir-378c ; hsa-mir-378b ; hsa-mir-378a-3p ; hsa-mir-4638-3p ; hsa-mir-518c-5p ; hsa-mir-451b ; hsa-mir-514a-5p ; hsa-mir-548n ; hsa-mir-1236-5p ; hsa-mir-1252-5p ; hsa-mir-1275 ; hsa-mir-1293 ; hsa-mir-1294 ; hsa-mir-1343-3p ; hsa-mir-135b-3p ; hsa-mir-181a-3p ; hsa-mir-184 ; hsa-mir-1908-5p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-211-3p ; hsa-mir-221-5p ; hsa-mir-2467-5p ; hsa-mir-298 ; hsa-mir-3064-5p ; hsa-mir-3188 ; hsa-mir-328-5p ; hsa-mir-3612 ; hsa-mir-3650 ; hsa-mir-3652 ; hsa-mir-3677-3p ; hsa-mir-375 ; hsa-mir-3912-5p ; hsa-mir-3919 ; hsa-mir-3937 ; hsa-mir-4265 ; hsa-mir-4283 ; hsa-mir-4292 ; hsa-mir-4296 ; hsa-mir-429 ; hsa-mir-4308 ; hsa-mir-4316 ; hsa-mir-4322 ; hsa-mir-4326 ; hsa-mir-4417 ; hsa-mir-4430 ; hsa-mir-4435 ; hsa-mir-4437 ; hsa-mir-4455 ; hsa-mir-4483 ; hsa-mir-4493 ; hsa-mir-4508 ; hsa-mir-4525 ; hsa-mir-4651 ; hsa-mir-4665-5p ; hsa-mir-4674 ; hsa-mir-4710 ; hsa-mir-4721 ; hsa-mir-4747-5p ; hsa-mir-4755-3p ; hsa-mir-4756-3p ; hsa-mir-4763-5p ; hsa-mir-4765 ; hsa-mir-4787-5p ; hsa-mir-4787-5p ; hsa-mir-483-5p ; hsa-mir-5010-5p ; hsa-mir-5088-5p ; hsa-mir-5196-5p ; hsa-mir-548e-5p ; hsa-mir-5589-5p ; hsa-mir-597-5p ; hsa-mir-6077 ; hsa-mir-608 ; hsa-mir-6134 ; hsa-mir-625-5p ; hsa-mir-635 ; hsa-mir-637 ; hsa-mir-642b-5p ; hsa-mir-6504-5p ; hsa-mir-650 ; hsa-mir-661 ; hsa-mir-663a ; hsa-mir-668-3p ; hsa-mir-670-5p ; hsa-mir-6739-3p ; hsa-mir-6747-5p ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6752-5p ; hsa-mir-6758-5p ; hsa-mir-6761-5p ; hsa-mir-6774-5p ; hsa-mir-6782-5p ; hsa-mir-6783-3p ; hsa-mir-6787-5p ; hsa-mir-6791-5p ; hsa-mir-6795-5p ; hsa-mir-6803-5p ; hsa-mir-6842-3p ; hsa-mir-6842-5p ; hsa-mir-6842-5p ; hsa-mir-6852-5p ; hsa-mir-6856-5p ; hsa-mir-6885-5p ; hsa-mir-6887-5p ; hsa-mir-7109-5p ; hsa-mir-7110-5p ; hsa-mir-7110-5p ; hsa-mir-7854-3p ; hsa-mir-8068 ; hsa-mir-8073 ; hsa-mir-887-3p ; hsa-mir-891a-3p ; hsa-mir-9500 ; hsa-mir-95-5p

Nearest miRNA

hsa-mir-10226/Upstream/169315; hsa-mir-4525/Downstream/373484;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/1761, chr17-CpG: 57/Downstream/5744

Upstream sequence

GAGTAAGTTGCTTTTGTACTTTGAGAGTTTCTGTTTGTTGATCAGTTGTTCCTGAGAACATGCTTCTCCTTCCGACAGGGAACTCcctccactagaatat

Downstream sequence

gagctccttgtggtcaagactgggtcccctgttcccttccccccagtgccAGCGGAGCAAAGGTCAGTCAGCGGCATAAGTTGTACCTGCTGGGAGAACT