VISDB Viral Integration Site DataBase

VIS ID

TVIS10001656

Fusion event

HBV-RAB38 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr11

Cytoband

q14.2

Reference genome

Start

End

87810130/88076962 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-let-7b-5p ; hsa-mir-30a-5p

Nearest miRNA

hsa-mir-10392/Upstream/1798564; hsa-let-7a-2/Downstream/99540;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/1038911, chr11-CpG: 45/Downstream/98113

Nearby gene

TMEM135(-770254) ; RAB38(+36285) ;

Upstream sequence

gcaggaaaatcacttgaacctggaaagcggaggttgcagtgagccaggattgtaccactgcactccagcctgggcaacagagagagactccatcaaaaaa

Downstream sequence

aaaaaaaaaaaaagaaagaaagaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaagaaagcaagcaagaaaagaaaaagaatataa

Target sequence

GAGGTCTGTCTGCCCTGGGTCAGAGCAGCAGGCAGAGCCGGCGCTTCTTCTGCCGTTGCGCCTTCTTCAGAGCGCTGAGAGCCACCTTGGCGGCCTCCCGGAAGACGTCCTCCACATTCTCCCGAAACTTGGCGGAACATTCCAGGTAGAGAG