Basic Information
VIS ID
TVIS10001658
Fusion event
HBV-LINC02161 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
88960553/89664736 (Hg38)
End
88960553/89664736 (Hg38)
Location type
Intronic
Target gene
LINC02161
Nearest miRNA
hsa-mir-10397/Upstream/997797; hsa-mir-103a-1/Downstream/351885;
Nearest TSS
ENST00000502646/Upstream/83527; ENST00000505109/Downstream/235928;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/774964, chr5-CpG: 17/Downstream/744790
Nearby gene
MEF2C-AS1(-632360) ; MIR3660(+351885) ;
Upstream sequence
atacatttatatatatacgtatatacgtatatacatgtatatacgtatatacgtatatacatgtatatacgtatatacgtatatacatgtatatacgtac
Downstream sequence
ggagtcttgctctgtcaccccggctggagtgcagtggcatgatcttggctcactgcagtttctgcctccttggttcaagcgattctcctgcctcagcctc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate