Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001671
Fusion event
HBV-OSTN integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
End
190964387/191246598 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/1416589; hsa-mir-3137/Downstream/3887908;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/383529, chr3-CpG: 81/Downstream/82561
Upstream sequence
tccactagaggctgaaaagtgctccaaatatccacttgcagattctacaaaaagagtgtatcaaaactgctcaatcaaaagaaaggttcaactctgttaa
Downstream sequence
tgtatcaaaaaaaaaaaaagaaagaaagaaagaaaGAAaagaagaagaggaagggaaaggtaaaggggaaggggaagaggaagaagaggaagaggaggat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.