IFT140 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001673
Fusion event
HBV-IFT140 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1653196/1603195 (Hg38)
End
1653196/1603195 (Hg38)
Location type
Intronic
Target gene
IFT140
miRNAs that regulate target gene
hsa-mir-93-3p ; hsa-mir-6874-5p ; hsa-mir-6500-5p ; hsa-mir-4633-3p ; hsa-mir-6080 ; hsa-mir-558 ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-22-3p
Nearest miRNA
hsa-mir-3176/Upstream/832918; hsa-mir-11401/Downstream/131790;
Nearest TSS
ENST00000527434/Upstream/18932; ENST00000498594/Downstream/6849;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/47851, chr16-CpG: 424/Downstream/6858
Upstream sequence
caaagcagaaggtaacttgtgctcagctggcaaccccgaccagctTCTCATGGAGTGCCACCTTGTCATGATGTGCCACCTCCTCCCCATGGCTGCTGGA
Downstream sequence
TGGCTGGCACGCATTTTAGTgcgtggctgggttccctaaaaccttatctacaaaaaccaccagcgagccagCAGGTGAGGTTTGTGGCCCCAGggatctc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate