Basic Information
VIS ID
TVIS10001675
Fusion event
HBV-LOC112267947 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1966502/1966388 (Hg38)
End
1966502/1966388 (Hg38)
Location type
Intronic
Target gene
LOC112267947
Nearest miRNA
hsa-mir-4277/Upstream/257520; hsa-mir-10397/Downstream/4861465;
Nearest TSS
ENST00000502646/Upstream/26616; ENST00000514519/Downstream/766;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/14831, chr5-CpG: 38/Downstream/40813
Nearby gene
CTD-2194D22.4(-65898) ; MIR548BA(+17527) ;
Upstream sequence
atacatgtatatacgtatatacgtatatacatgtatatacgtatatacgtatatacatgtatatacgtacgtatatacatgtatatacgtatatacgtat
Downstream sequence
ccagtagcaccgtccctcctgggaagttgttggagacgcaaattctccagcctcatccctgacctatagatttagagctctggggtatggcccagcagca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate