VISDB - VIS Detail

Expression analysis of TCGA samples

Basic Information

VIS ID

TVIS10001676

Fusion event

HBV-RNPS1 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Tumor

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

27703150

Virus Sequence

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Host Sequence

Chromosome

chr16

Cytoband

p13.3

Reference genome

GRCh37/hg19

Start

2318214/2268213 (Hg38)

End

2318214/2268213 (Hg38)

Location type

UTR5

Target gene

RNPS1

miRNAs that regulate target gene

hsa-mir-1296-5p ; hsa-mir-342-5p ; hsa-mir-30b-3p ; hsa-mir-615-3p ; hsa-mir-378a-3p ; hsa-mir-106b-5p ; hsa-mir-149-5p ; hsa-mir-30c-5p ; hsa-mir-92a-3p ; hsa-mir-3163 ; hsa-mir-218-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6742-5p ; hsa-mir-92a-2-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6729-5p ; hsa-mir-6881-5p ; hsa-mir-4649-5p ; hsa-mir-5589-5p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-6776-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-1283 ; hsa-mir-888-5p ; hsa-mir-548m ; hsa-mir-5582-3p ; hsa-mir-3662 ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-221-3p ; hsa-mir-222-3p ; hsa-mir-539-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-1278 ; hsa-mir-888-3p ; hsa-mir-590-3p ; hsa-mir-4311 ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-1262 ; hsa-mir-1324 ; hsa-mir-424-5p ; hsa-mir-4701-3p ; hsa-mir-497-5p ; hsa-mir-6736-5p ; hsa-mir-6838-5p ; hsa-mir-7153-3p

Nearest miRNA

hsa-mir-1225/Upstream/132084; hsa-mir-11401/Downstream/2500;

Nearest TSS

ENST00000527434/Upstream/58; ENST00000567888/Downstream/184;

Nearest CpG islands

chr16-CpG: 182/Target, None/Upstream, None/Downstream

Upstream sequence

TGACGTCAGAGTCAAGGAGCGGGAAGTCGCCGCCGCCCGGCGCGCAGCGATGACGTAAACGCCTGGCCCAATGGGCGCCAGCGAGGAAGCGTTAAAGAGT

Downstream sequence

CAAGGCAGTTTGTGGGAGTCGCGCTGGGGACGTTCAAGGTGTCTCCTAGCCGGTAAAGTCCCTGGGACTGACCGGGCTGGTTGCACGCTTACTGGAGCGG

Reference

Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.