hsa-mir-4753-3p _LIHC.png
EBF4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001678
Fusion event
HBV-EBF4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
p13
Reference genome
GRCh37/hg19
Start
2733385/2752739 (Hg38)
End
2733385/2752739 (Hg38)
Location type
Intronic
Target gene
EBF4
miRNAs that regulate target gene
hsa-mir-3942-3p ; hsa-mir-4753-3p ; hsa-mir-4793-3p ; hsa-mir-3130-3p ; hsa-mir-130b-5p ; hsa-mir-4257 ; hsa-mir-6847-5p ; hsa-mir-7151-5p
Nearest miRNA
hsa-mir-1292/Upstream/99897; hsa-mir-1-1/Downstream/1164755;
Nearest TSS
ENST00000382410/Upstream/243; ENST00000477287/Downstream/2349;
Nearest CpG islands
chr20-CpG: 144/Target, None/Upstream, None/Downstream
Upstream sequence
GGCGCCGTGAGAGTCGACCCTGGCTCAGCCCTCGGGGTCAGGCCCACCGTCCCCGCCTGGGACCTCCCCTGCCGCAGAACCTCAACCCCACCCCTAGGCT
Downstream sequence
GCACATCCCGGGGTCCTGGGGCCAGAGTACTCCGTGCACTTTTAGCCTTCTTTGCCGGTCCGTTATGCACATCGCTTCTAGGCCTCCGGTCCCCCTGAAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate