VISDB Viral Integration Site DataBase

VIS ID

TVIS10001696

Fusion event

HBV-TMEM241 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr18

Cytoband

q11.2

Reference genome

Start

End

20843501/23263537 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7a-5p ; hsa-mir-3974 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4317 ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-6853-3p ; hsa-mir-4729 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-548l ; hsa-mir-369-3p ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-5003-5p ; hsa-mir-5582-5p ; hsa-mir-4438 ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-129-5p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-7113-5p

Nearest miRNA

hsa-mir-1-2/Upstream/330099; hsa-mir-122/Downstream/1058138;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/126430, chr18-CpG: 30/Downstream/174170

Nearby gene

CABLES1(-3067) ; TMEM241(+32478) ;

Upstream sequence

CCCACGTCTGAGCCCCCTGGTAGAACATGAAATGTTTGGAAAACTTGCTTCCATAACAAGTAAGCTAAGGGGCTTTTGAAAGTAAGTAAAAGATCACAAT

Downstream sequence

CAGGTTTAACGCAGCCAGTGTTCACGTCCACCAACATTTCACCAGCTAGTGTCTCGTGGTGCATGTGTAGATTTTCCACCATGTGTTATAATTAAGACAA