LAMA3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001697
Fusion event
HBV-LAMA3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr18
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
21381775/23801811 (Hg38)
End
21381775/23801811 (Hg38)
Location type
Intronic
Target gene
LAMA3
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-181a-5p
Nearest miRNA
hsa-mir-1-2/Upstream/868373; hsa-mir-122/Downstream/519864;
Nearest TSS
ENST00000575820/Upstream/112127; ENST00000592519/Downstream/25593;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/111426, chr18-CpG: 138/Downstream/212238
Upstream sequence
ttttggtctttttgatgatagccattctaacggagatgatatctcattgtgggtttgattttcatttccctgatgattagtgatgttgaacattttttcg
Downstream sequence
tatacttgttggccttttgtatgtcttctttttagaaatgtctatttatatcctttgcccacttttaaatcacattatttgattttttgctgttcagttg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate