Basic Information
VIS ID
TVIS10001702
Fusion event
HBV-LOC105372563 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
22451371/22470733 (Hg38)
End
22451371/22470733 (Hg38)
Location type
Intronic
Target gene
LOC105372563
Nearest miRNA
hsa-mir-103a-2/Upstream/4000042; hsa-mir-1-1/Downstream/3737453;
Nearest TSS
ENST00000382410/Upstream/17373; ENST00000635173/Downstream/824;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/756027, chr20-CpG: 69/Downstream/97596
Nearby gene
SREBF2-AS1(-50090) ; LINC00261(+89821) ;
Upstream sequence
TTAGTCCTTGTCTGTCAAACATTATTCTCTGTTTGATTAAGCTATACAAACAGCAGGACTCTGATGTAAGCAAGATTTTTTCTTTTTGTATGCTGTACAT
Downstream sequence
AAATGTCTTTAATCTTTTGAGTTAGGAATTTATTGGTGGAGTCTTCATGAGTAAATCCAGCAAATCTCTGAAATAATTTTCCCTCCAAAAGGAAATAGAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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