VISDB Viral Integration Site DataBase

VIS ID

TVIS10001704

Fusion event

HBV-ARID1A integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr1

Cytoband

p36.11

Reference genome

Start

End

27076734/26750243 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-101-3p ; hsa-mir-221-3p ; hsa-mir-98-5p ; hsa-mir-877-3p ; hsa-mir-296-3p ; hsa-mir-181a-2-3p ; hsa-mir-18a-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-324-3p ; hsa-mir-331-3p ; hsa-mir-92a-3p ; hsa-let-7e-5p ; hsa-mir-203a-3p ; hsa-mir-324-5p ; hsa-mir-891a-3p ; hsa-mir-3688-5p ; hsa-mir-4642 ; hsa-let-7a-2-3p ; hsa-let-7g-3p ; hsa-mir-144-3p ; hsa-mir-3177-5p ; hsa-mir-185-5p ; hsa-mir-135b-3p ; hsa-mir-561-5p ; hsa-mir-583 ; hsa-mir-609 ; hsa-mir-765 ; hsa-mir-3173-3p ; hsa-mir-4306 ; hsa-mir-3150b-3p ; hsa-mir-4644 ; hsa-mir-4784 ; hsa-mir-6891-5p ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-507 ; hsa-mir-557 ; hsa-mir-450b-5p ; hsa-mir-876-3p ; hsa-mir-3680-3p ; hsa-mir-4649-3p ; hsa-mir-6134 ; hsa-mir-7162-3p ; hsa-mir-488-3p ; hsa-mir-5681a ; hsa-mir-4666a-3p ; hsa-mir-1182 ; hsa-mir-31-5p ; hsa-mir-222-3p ; hsa-mir-485-3p ; hsa-mir-539-3p ; hsa-mir-664a-3p ; hsa-mir-1266-5p ; hsa-mir-4518 ; hsa-mir-4695-3p ; hsa-mir-6823-5p ; hsa-mir-7641 ; hsa-mir-7854-3p ; hsa-mir-218-5p ; hsa-mir-127-5p ; hsa-mir-3613-5p ; hsa-mir-3664-3p ; hsa-mir-6830-5p ; hsa-mir-377-3p ; hsa-mir-3190-3p ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-4768-3p ; hsa-mir-3618 ; hsa-mir-6730-5p ; hsa-mir-4708-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-448 ; hsa-mir-196a-3p ; hsa-mir-5692a ; hsa-mir-153-3p ; hsa-mir-4303 ; hsa-mir-5583-5p ; hsa-mir-3129-3p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-628-5p ; hsa-mir-7114-3p ; hsa-mir-1180-5p ; hsa-mir-4750-3p ; hsa-mir-2681-5p ; hsa-mir-3149 ; hsa-mir-6512-5p

Nearest miRNA

hsa-mir-12136/Upstream/195650; hsa-mir-101-1/Downstream/3988913;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/52713, chr1-CpG: 58/Downstream/37384

Nearest cancer related gene

ARID1A(TSG, No orient, 0)

Upstream sequence

GAGGAACTCTGTGCCCTGCCTATAGGGTGAGAGTAGGGAACTAGTCCTGTGACTTGGGTCAAAATAGATGGTTTAATAGAATGGCTAGCAGATCTCTGCT

Downstream sequence

TGGAGCATGGAGGCTTCTGATTCCTCACTGCCTCCACAAAACTGTTTTCATCTTGGAAGTTCCCAAGGCTAAAAAACAATTTTAGCCTTTAGTTGTTGTA