Basic Information
VIS ID
TVIS10001706
Fusion event
HBV-chr19 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
28766864/28275957 (Hg38)
End
28766864/28275957 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/7876603; hsa-let-7e/Downstream/6846743;
Nearest TSS
ENST00000633603/Upstream/210690; ENST00000592931/Downstream/37543;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/366032, chr19-CpG: 67/Downstream/451137
Nearby gene
LINC00662(-482016) ; LINC00906(+689174) ;
Upstream sequence
ttaagtgcacagtttagtttcatcaagtgcatttacaatgtaatgcaacagttactactatccatttctagaacgcttttattatcccaaacagaaactc
Downstream sequence
tgtacccattagatattaacttcctgtaagttctaccccagcccatggaaccctctattctaatctctttctctgtaactttacctattccaggtacctc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate