Basic Information
VIS ID
TVIS10001710
Fusion event
HBV-ASIC2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
31545475/33218457 (Hg38)
End
31545475/33218457 (Hg38)
Location type
Intronic
Target gene
ASIC2
Nearest miRNA
hsa-mir-1180/Upstream/868255; hsa-mir-10226/Downstream/3815288;
Nearest TSS
ENST00000595228/Upstream/106599; ENST00000585093/Downstream/72650;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/289952, chr17-CpG: 216/Downstream/72870
Upstream sequence
GACTGTTCTGCTCAGCTGACAGCCTGTGTTCTATTCATCTGAGCATTCTCACATCGAGCCCAGTGCCCGGCACAGTGGAACTCAAAGTCTGTTGGGTGAA
Downstream sequence
taagtctccgcttcaccttccctaagaagtgagtaataactcctgccttgaaggactgcaatagagatgcagaagagaatatgccaaaggctgtgcctgg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate