Basic Information
VIS ID
TVIS10001712
Fusion event
HBV-chr19 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
32809122/32318216 (Hg38)
End
32809122/32318216 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/11918862; hsa-let-7e/Downstream/2804484;
Nearest TSS
ENST00000633603/Upstream/212300; ENST00000587084/Downstream/27378;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/93432, chr19-CpG: 52/Downstream/27231
Nearby gene
THEG5(-724666) ; ZNF507(+27392) ;
Upstream sequence
gagccgagattgcgccactgcactccagcgtgggcgacagcgagactccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTATTTT
Downstream sequence
CTGggccaggcacggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggtggatcacttgaggtcaggagtttgagaccagcctggccaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate