CX3CR1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001720
Fusion event
HBV-CX3CR1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
39307395/39265904 (Hg38)
End
39307395/39265904 (Hg38)
Location type
Exonic
Target gene
CX3CR1
miRNAs that regulate target gene
hsa-mir-296-3p
Nearest miRNA
hsa-mir-12127/Upstream/127638; hsa-let-7g/Downstream/4848308;
Nearest TSS
ENST00000440867/Upstream/73308; ENST00000326306/Downstream/14130;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/84725, chr3-CpG: 125/Downstream/117301
Upstream sequence
gtaatcccaacactttgggaggccaaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaat
Downstream sequence
AGTAGGAAGCCAAGAAAATTTGTTTCCACATTGCGGAGCACGGGCCAGATTTCCTGGAGGACCTCGGGGTAGTCACCAAGGCATTCATTTTCTTTCTGCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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