PARP8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001739
Fusion event
HBV-PARP8 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
50083842/50788008 (Hg38)
End
50083842/50788008 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA5H
Target gene
PARP8
miRNAs that regulate target gene
hsa-mir-145-5p
Nearest miRNA
hsa-mir-10397/Upstream/12230447; hsa-mir-103a-1/Downstream/3163496;
Nearest TSS
ENST00000502646/Upstream/120115; ENST00000508923/Downstream/72012;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/120065, chr5-CpG: 53/Downstream/181243
Upstream sequence
TCtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagacagagagagacagagagagacagagagaaagag
Downstream sequence
TGTGCCTTCTCATCTCCCATTGTTTTATTCTAAAAATGATGTATGTAGATGCAAACATGTTGTCTTTCTTCCACTTAAAAAATAATGCACTAACTGTCCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate