SLC1A7 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10001741
Fusion event
HBV-SLC1A7 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p32.3
Reference genome
GRCh37/hg19
Start
53566147/53100475 (Hg38)
End
53566147/53100475 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
SLC1A7
miRNAs that regulate target gene
hsa-mir-647 ; hsa-mir-6762-3p ; hsa-mir-604 ; hsa-mir-4660 ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-4793-5p ; hsa-mir-6736-3p ; hsa-mir-6501-3p
Nearest miRNA
hsa-mir-12136/Upstream/1264073; hsa-mir-101-1/Downstream/953604;
Nearest TSS
ENST00000473358/Upstream/9493; ENST00000439621/Downstream/14101;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/7505, chr1-CpG: 53/Downstream/96162
Upstream sequence
ACCTCGGTACACTCACACACCCCGCCTCAGTACACTCACACGTCTTGTTTCAGTACACTCACACGTCCCACCTCGGTCCACTCATACACACTGCCTTGGT
Downstream sequence
GCACTCACAAACGCTGCCTCGGTACATTCACACACACCACCTCGGTACACTCGCACACCCAACCTTGGTATACTCACACACACTGCCTCAATACACATAC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate