VISDB Viral Integration Site DataBase

VIS ID

TVIS10001752

Fusion event

HBV-USP1 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr1

Cytoband

p31.3

Reference genome

Start

End

62894735/62429064 (Hg38)

Location type

Promoter

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-100-5p ; hsa-let-7f-2-3p ; hsa-mir-517a-3p ; hsa-mir-517b-3p ; hsa-mir-517c-3p ; hsa-mir-625-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-mir-298 ; hsa-mir-4424 ; hsa-mir-4517 ; hsa-mir-1262 ; hsa-mir-4701-3p ; hsa-mir-6736-5p ; hsa-mir-4536-3p ; hsa-mir-5683 ; hsa-mir-7641 ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-4695-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-542-3p ; hsa-mir-661 ; hsa-mir-6776-5p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-1226-3p ; hsa-mir-1247-3p ; hsa-mir-25-5p ; hsa-mir-3160-3p ; hsa-mir-4327 ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-4649-3p ; hsa-mir-4722-5p ; hsa-mir-558 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-12132/Upstream/350205; hsa-mir-101-1/Downstream/897861;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/109602, chr1-CpG: 201/Downstream/6916

Upstream sequence

gacagattctgtatgtggtgaagtcttcctggttcaaagataggtgtcttcttgttgcatctcagcctggggaaagtgtgagggcactctctggggtctc

Downstream sequence

tttaactgatatcattccttaatcatctcccaaacacctcacctccaaataccatcatgccgggcattaggtttcaacatgaattttagggaacacaGAa