Basic Information
VIS ID
TVIS10001761
Fusion event
HBV-chr3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
75502954/75453803 (Hg38)
End
75502954/75453803 (Hg38)
Location type
Intronic
Target gene
ENPP7P2 ; LINC02018
Nearest miRNA
hsa-let-7g/Upstream/239254; hsa-mir-12124/Downstream/176960;
Nearest TSS
ENST00000440867/Upstream/1606; ENST00000308062/Downstream/210527;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/17665, chr3-CpG: 88/Downstream/125894
Nearby gene
FAM86DP(-18688) ; MIR1324(+176960) ;
Upstream sequence
aaagcgctccaaatatccatttgcagatactagaaaaagactgtttccaaagggctcaatcaaagaaaggttcagcactgtgatttgaatgcacacatcc
Downstream sequence
AGCAAGAGCATGGAGGCCCTGGGTTTTGAACTGTGAGATAAGGAAGATGATGAAAACCTCCCTAGCAGCCAGGCAAGCACAAGATTCCTGTGAAATCCAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate