Basic Information
VIS ID
TVIS10001762
Fusion event
HBV-RNF219-AS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
79161580/78587445 (Hg38)
End
79161580/78587445 (Hg38)
Location type
ncRNA_intronic
Fragile sites / regions
FRA13E
Target gene
RNF219-AS1
Nearest miRNA
hsa-mir-1297/Upstream/889329; hsa-mir-1267/Downstream/9031220;
Nearest TSS
ENST00000623511/Upstream/8969; ENST00000607269/Downstream/8684;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/668198, chr13-CpG: 91/Downstream/8534
Upstream sequence
TCAACTGGAACCTGCGCGGGACTTCAAGGAGCAGAAAATCCAGCGCAGAGCTAGGGCGGAGGCAGCGGGGGGTCAGAGACCCTCCCTGTTTATTGATCAC
Downstream sequence
CTTTGGCATGAAATATCTTGTATATGGGTTCGGACCATCGCGAAGGTTTCAGACACAAACAAGCTACAGCAACACTTTCTCTACGCATCCCCTAGTTATT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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